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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88658206, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKIVLIISI FLLSSCGYHG CIKPQSVLFD EYSTTVEAGL EDGKKEHVAW VKSDLVLAGR  60
   61 QFLTIKVDTV NVNFCNNTKD VVNIFSSEGS TLDSSAKKFP VNIPNIMKGE KLNFRLSPAL 120
  121 KFTVDKDICK NNNPKVYVQN TSKCMEDYLD TEYYIPVDNY DFQMNNLMYL KDRGSANKDK 180
  181 EKSWINFPLK ILYHLDRKTY RDVSQMNISK LSSDRYQNNN DLFYLCVTDK RLNEYVTKIV 240
  241 EDMLNKTSSG NTAYSGDKKE QLISEKKESL LRKRDAVRKK YQKLYDAYTV NMLCGNLCNI 300
  301 PGYDKQKLDK NCFVVETNNM LNSCTIEKSG ISGCNLNEAG QYSTVLPFLY LTHDSGITNF 360
  361 ITVDDAVKKW QADNNSSSDI GLLTNHQYSI SKDLDKNLYL ELRVKDDLEL IGKYTIEVTK 420
  421 DCSNHVKDSL YYTISKGPPT VKPGEQGTTP LNFINNEDTI VKLTGNDEVG ELYFGVKDNG 480
  481 DGYENNTGYF NITVIAKKKI PKVISYMVER LKDSLERGLY GTSSTNSGGV NIIYNSIIEN 540
  541 MHFIKIVNSL LVLYILMNAL FYCAGFSKAS IFELLTITLK ISIIIYVIGP NSWDFFNNHL 600
  601 FKLFTEAPIQ LISIMTGQDP DTSTSFEFLD IILYRFSLSE SWLQILALLF AGPVGWVSVV 660
  661 LIFWGLVVLF LTIATAVITY LISIILIGLL LSIAPFFIIC ILFRRTKAIF DSWIKSLVQT 720
  721 AMQPVIIFAS FALLTQVIDN IIYAMFNFES CDVCVLRPEF DIGITTIGFC LLEFLLPLGF 780
  781 SPVSVFTDNV RDSVNSDTVM FIGLPMPIVN ILIFVIMANA TKHFVGSSGE MCTSIFGSFA 840
  841 NLSMVAEGAK ESALGIIGMD QNSRMQRSRY QQMNEMNNQD SDGERRRDPL DLHSPSRSDD 900
  901 STNRTSRGGV SIPENPPSSF GR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle