YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88658199, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKRVVITG LGLVTSLGSD LKTVWDSLSK GISGIRKIDR FDTSDLDCKV AGQVTTKPES  60
   61 EEYIFDAGDY IPEKDLKKMD TFIHFGIASA TQAINDSNLL DYKDLDYSRV GVIVGSGIGG 120
  121 LQFIEKTVIC LKERGPKRIS PFFIPASLIN LTSGHISMKY GFTGLNDAVV TACSTGAQAI 180
  181 GNAARVIQSG EADVIIAGGT ESAICRIGIA GFAAMKALST KFNDTPELAS RPWDKQRDGF 240
  241 VMGEGSGVVI LEDYEHAKKR GARIYGELLG YGMTSDAYHM SAPHPEGKGG IKSIELALSN 300
  301 AQLNPESINY INAHGTSTPI GDSIEIQAIK NVFKESVYKV PISSTKSSIG HLLGAAGSVE 360
  361 AIFCILAMNT GIAPPTLNLH ESSEDPKLNL VPLNAQEHKI NYCLSNSFGF GGVNVSLVFG 420
  421 KV

Type	Start	End	Confidence
Signal Peptide	1	18	0.96
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	422	0.93