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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88599619, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCNFIKKGFI KLLLLLVITA CESNQHPVPR CVPADVFTET RTASVSAYFD SRSEDFIADN  60
   61 KSLGNIVKND QVVRWKYTGY VTDGRPIVLK AEGMWTAWVN DVSAEKSVSF GDEDSEHYNQ 120
  121 ILSVERICGP YNKIEKTFVP DGHSECKVSC ELITGVKDDL ERGAYGPPCW FKNGYGAYLL 180
  181 FKRPDDPEPN ETLDHMRYPV SPVMHIGYKP LELAGSDVFS TKNKPIMNSL CQKVQLEPGW 240
  241 KIYVKILDKY YYDNVGGYAI TFLEGVKTEK QFSVFEWVRK QVRGELDKAG EQVFRHLVGN 300
  301 PIFKNFIFSV LTLFLVFGAL AYIFGMVQSP FGDIIIRILK ISLVILLISP SSWEFFYNHL 360
  361 LALFIHGIDQ IIALINSHTG SYNPKEPFSF LDDMIVNKIF SPVIWKIKIR ALIIADFSSI 420
  421 FAVCVIIIAV FIYIALCMYG CVIYLTAFVG ITFLIGLFPL FLLGILFSQF KSLFDGWLTQ 480
  481 CVSFAMQAIL MFTLISLFGA LIMNYYYRIF GFTTCYNEWL KVKICVLGKI GCIVDQSIFG 540
  541 WTPGQTYDPK VIGLTTDFNL NDRKSSGSAR YKFTGGGAYI DVPPDRKHKD FRYVDYPFLD 600
  601 PDAKTDGNPF GVTVSQDSPF RQLSYYINAL LSSNKKYVAA RLVKDIEDEL DVLEKNGTIS 660
  661 LNSKNKVLQI IQQRRTKDNS EKKSELEKYK DEDFKSQIID SIIADVIGSA AQERTPQEEL 720
  721 NKQYDYWLIL RVRAGYLIFW TEVGSLLLAA LLIWQMRAFV QSVAVSLAGG NMMSQTIASM 780
  781 YEGGFMKIFS GIPVVGVVFQ KIDQGIDGLK FAVGNYITAV ARMPLNALKS IPYLGAAVKF 840
  841 TAGVTGALTS SYNEYDRSFS NNFKRLNYAR AFIGAHLGFS PLDALKYLGG HVAGKMLGNR 900
  901 DGGLIHNAIE DRKAALDSLK AHILGPEKHR PSPYIPNKKK ETEDDDARNP FSKETVGNKS 960
  961 GTVSPDEYKG GDKNHIIREG LRSEAGSALS DDYKDGDKSH IIREGLRSEA GSALLDGYKG1020
 1021 GNGSDIIKGG LPTEGSTLLD RYGNVCVSEG NIEHALEVRE QLKTMLDNAE NDTALQTIQY1080
 1081 DCDRLDNALH EYLGDKFDDV TQGYASSRDP MGHPQDLITE DLSKISASSD FRDLNAIDLG1140
 1141 TQVQVGSDIG SDVLQQGSAD GNRSEVEVSM DISKRDALLE QMELKGMEAA SGTEAQLYDS1200
 1201 AELSTPLDVT SSINNVSSEV SQQDLASNGE IEVSLDKDLE LKNLDVVSGD IPDVEVTSSS1260
 1261 DDVTQIYDSA QDRDSCLDII SSADDASSEV SQQDLASNGE IEVSLDKDLE LKNLDVVSGD1320
 1321 IPDVEVTSSS DDVTQVYDST EDRDSCLDIV SSADDTSSEI SQQDLEGNDG YEIDKDMGSS1380
 1381 NESMLDEIPG GFADVIQDCS DASLSTPLGM SARDDTDATD TVEDPKENVL PQDVDLEDLD1440
 1441 TTHSTNDIAD FSGESSLFDA TSESDSAAFV GEQSIDFSTE EGSDLPSEVV AQHDVDSQDS1500
 1501 SVSVSDMAVA DMEQGTEDSK YTDVDGLSDS VLDLGYLEGN VDNPDIEPEH DMSQQYSTET1560
 1561 EELSDMLSDD VIEPEGVSET DTQVDSEESQ DDSGTAGQVE DERVHDEVPY DTQDSTSGDK1620
 1621 GDIAEHDDKD GVVEHEDTVD QSIDDTHEEE GKFTEGIVSE SVTEPEGVSE TDTQVDSEES1680
 1681 QGDSSASDQV EDERVHDEVP YDTQDSTSGD KGDIVEHEDK DSVVEHEGTV DQSIDDTHEE1740
 1741 EGKFTEGIVS ESVTEPEGVS ETDTQVDSEE SQGDSSASGQ VEDERVHDEV PYDTQDSTSG1800
 1801 DKDDIVEHED TVDQSIDDTH EEEGKFTEGI VSESVAEPEG VSETDTQVDS EESQGDSSAS1860
 1861 GQVEDERVHD EVPYDSQDDT QDSTSEDEGD VVEHGDKGDI VAHEDKDSVV EHEGTVDQSI1920
 1921 DDTHEEEGKF TEGIVSESVT EPEEVSEADT QVDSEESQGD SSASDQVEDE RVHDEVPYDI1980
 1981 QDSTSGDKGD IAEHGDKDDI VEHEDTVDQS IDDTHEEEGK FTEGIVSESV TEPEEVSEAD2040
 2041 TQVDSEESQG DSSASDQVED DKVHDEVPYD SQDDVEHGDK GDIVAHEDKD SVVEHEGTVD2100
 2101 QSIDDTHEEE GKFTEGIVSE SVAEPEGVSD VDTQVDSEES QGDSSASDQV EDDKVHDEVP2160
 2161 YDSQDDTQDS TSEDEGDVVE HGDKGDIVEH EGTVDQSIDD THEEEGKFTE GIVSESVAEP2220
 2221 EEVSEADTQV DSEESQGDSS ASDQVEDERV HDEVPYDAQD STSGDKGDIA EHGDKDDIVE2280
 2281 HDDKGGVVEH EDTVDQSIDD THEEEGKFTE GIVSESVTEP EGVSETDTQV DSEESQGDSS2340
 2341 ASDQVEDERV HDEVPYDSQD DTQDSASEDE GDVVEHGDKG DIVEHEDKDS VVEHEGTVDQ2400
 2401 SIDDTYEEEG KFTEGIVSES VTEPEEVSEA DTQVNNEESQ GDSSASDQVE DERVHDEVPY2460
 2461 DAQDSTSGDK GDIAEHGDKD DIVEHDDKDG VVEHDDKDGV VEHEDTVDQS IDDTHEEEGK2520
 2521 FTEGIVSESV TEPEEVSEAD TQVDETLQDL EHEDLKEGAD DISDSETDEN SSGNSDSVSD2580
 2581 VEGLASLASI GEESTITQNV KTQSVQSSAI LSMKDRDGVL DNKGIPSDQL DVKDTEKKKK2640
 2641 ESSKSKVENS DKKAKSTKAT VTPKSLKKTF KVILSQCTQE LSNKLSEAFD KLFIDPQSGK2700
 2701 QKRRLSKQDI ALMIEQLKAM IESLKDRKAQ VTDPDEMKAI EESIKQAEST IQNLLNQE

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