YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599551, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYFLFHFFA VLIVLSSISV VYVSNPVYSV LFLILTFFIS STLFILLGAE LIAMLVIIVY  60
   61 VGAVAVLFLF VVMMLDINYS RLKSGFTKYL AIGLLCGMIL FVNIVFVIKQ SATTELVTGS 120
  121 VSYVSNVIAI GNLIYTKYMY VFHLSGILLL ISIIGSLVLT LRTKNGNVYR QSVGAQVNRS 180
  181 STVKYVNVKV RQGVDYENSN

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.48
Transmembrane Helix	5	23	0.92
Cytoplasmic	24	29	0.38
Transmembrane Helix	30	49	0.87
Non-Cytoplasmic	50	55	0.35
Transmembrane Helix	56	77	0.90
Cytoplasmic	78	85	0.53
Transmembrane Helix	86	108	0.90
Non-Cytoplasmic	109	139	0.56
Transmembrane Helix	140	161	0.93
Cytoplasmic	162	200	0.90