YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COXX_EHRCR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.93
Transmembrane Helix	27	44	0.93
Non-Cytoplasmic	45	49	0.72
Transmembrane Helix	50	72	0.94
Cytoplasmic	73	92	0.94
Transmembrane Helix	93	115	0.89
Non-Cytoplasmic	116	119	0.70
Transmembrane Helix	120	140	0.90
Cytoplasmic	141	147	0.87
Transmembrane Helix	148	167	0.87
Non-Cytoplasmic	168	174	0.66
Transmembrane Helix	175	195	0.87
Cytoplasmic	196	213	0.79
Transmembrane Helix	214	237	0.86
Non-Cytoplasmic	238	242	0.69
Transmembrane Helix	243	265	0.86
Cytoplasmic	266	273	0.77
Transmembrane Helix	274	294	0.93
Non-Cytoplasmic	295	295	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKCESVKP QLVNEVLGYW DLLKPKIMYL VVLTGITGMI IAPGNIHPFI GIISTLCIAL  60
   61 GSGAAGAINM WYDSDIDALM QRTKNRPIPS GKIARSTAIE LGLVLSVISV TVMMIAVNYL 120
  121 SGILLAISIG FYSLVYTMYL KRRTPQNIVI GGIAGALPPI IGWTSVTNAI SIESLILFLI 180
  181 IFVWTPPHFW ALSLLNYQEY EKAKVPMLPV THGIFTTKIY ILVYSIILFI ITLLPGIFLK 240
  241 DCLLYETCAI PLGMTFVFHA FKVFVSINHY KYKAMFTYSI AYLFILFICI IISSF