YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88658053, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLKFELMLA LRYLRSSSSK FLCSMITMLS LVGITLGVAT LIVVMSVMNG FGEKLLNCVV  60
   61 GLNGHIVIYF NDSVDYDYRS IAESIKGISG VKDAVPITEN QAMIKSNSNV SGVVVRGIEK 120
  121 QDIERNNIIV NNIVRGSIDE FNDGIAIGIK LAEILHVNYG DKLTIVSSES ISTVIGNIPR 180
  181 MKTYKIAAVF DVGMYEYDST LVYMPLHASQ LFFHYDNRVK SIEVSILDVN KSSEMLEIIE 240
  241 SKTNMKGEDW KMQQGSYFHA LKIESNVMFF ILTLIIIVAT FNIISSLSIL VQDKKGAIAI 300
  301 MRTLGVTRCG ILRIFCMCGF FIGLIGTILG CVLGIVVSLN IDGIKNMLEK ISDSNIFDPV 360
  361 IYFFDTLPSV LLVEDVVKIS LLSLFLSLVA AILPARKAAC QDPADVLRHE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.88
Transmembrane Helix	21	43	0.87
Non-Cytoplasmic	44	267	0.95
Transmembrane Helix	268	291	0.93
Cytoplasmic	292	310	0.92
Transmembrane Helix	311	337	0.89
Non-Cytoplasmic	338	375	0.90
Transmembrane Helix	376	395	0.78
Cytoplasmic	396	410	0.83