YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599496, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEENQNNQY TEIEENVNVV GVNKGKKFIT IGVMLVGLGF AYYYFFTGKK PDDSLNKPQT  60
   61 TEEADIEKLL KESVPPTQEV SPPINIPPQL PELPPLVSPS LPSIPTVEKP KVLEIPKIPK 120
  121 IKPKQPVEIK PKPQPQPEPL PKIPLPVQNK IDIAAPIAPI TTGYDKERRA TSMLAVSGGQ 180
  181 NVASGTSENG ERESNIDTTI NKMNSIISLQ TTSSPNVVAT KVSNLELTIL QGKIIDVVLE 240
  241 TAINSDLQGT LRGIVARDVY AEASNTVMIP KGSRLIGSYS FDASPGKTRV QISWNRVILP 300
  301 HGIDITLDSN GTDELGRQGA SGVVDTKIGN ILTSTILLAG VSIATSYATS KIPEINNYPI 360
  361 LESDSKEKKD KEKDDTGDKS KSTKTTLPVK ILSQAVDDFS NSIKDIIKKY SNNNPTVYVD 420
  421 QGTLLKVFVN KDIVFPKSAV RGIDIVN

Type	Start	End	Confidence
Cytoplasmic	1	27	0.68
Transmembrane Helix	28	46	0.72
Non-Cytoplasmic	47	447	0.94