YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88658008, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQTYNTKVL IIGSGAAGCT AAIYAARANL KPILITGMCP GGQLTITTDV ENFPGFAHAV  60
   61 QGPDLMEQMK QQAHNSGAQI ISDEIKEIHS DVYPFKCIGI FGDQYIADSI IIATGAQAKW 120
  121 LNIKSEETFK GRGVSACATC DGTFFAGSDI AVIGGGNTAV EEALYLTRYA TKVFLIHRRD 180
  181 TLRAEPIMQE RLFSNDKIQV IWNSVVEEIL GNKESGNVEA IALKSVKTGD ITTISVKGVF 240
  241 IAIGHTPNTQ ILTTKDNGNI VDLDNEGYII TKPGSTVTSH PGIFAAGDVQ DKIYRQAVVA 300
  301 AGSGCMAALE AAKFLSEQ

Type	Start	End	Confidence
Signal Peptide	1	25	0.85
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	318	0.98