YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599452, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTQESGHAL HYILDEKTSN SLTEALETQN YLVVEEIINK SDNVQLAYFL LTSTYQHRKE  60
   61 FFNSINDNLI KDILIHLVPD LRQEIIKILG IKKVASLISQ LSTEDIVVII EDLDKESQIN 120
  121 ILNILPKSNK IHVNELLSYP EESAGRLMHK DIIIAPEYWT INQLLNFLKQ NNKLNKEFYE 180
  181 IFIVDPKLNP IGYLRLDNII CSNSTQIIKN LMKTDIKIIK SHTTQEEVAE IFRKYSLLSA 240
  241 PVINRDGRII GSIIVHDILN VMHQEAEKDV LHLGMVSNND MSSSLSKTVI KRLPWLIINL 300
  301 LTSTISSMII GIFSNTLQHF IALSVIMPII ASMSGNAGLQ ALTVTIRALS TKQLTNRNAH 360
  361 RLLFKELFVG FINGLILAIV SSIALMLRGQ HVDIQVLAGT SMIITFSIAT FLGAAIPMIL 420
  421 NLFKIDPAIS SSIIICATSD TLSFLIFLGM ATIFLL

Type	Start	End	Confidence
Cytoplasmic	1	294	0.98
Transmembrane Helix	295	314	0.94
Non-Cytoplasmic	315	320	0.76
Transmembrane Helix	321	346	0.85
Cytoplasmic	347	366	0.87
Transmembrane Helix	367	387	0.94
Non-Cytoplasmic	388	396	0.84
Transmembrane Helix	397	420	0.86
Cytoplasmic	421	431	0.75
Transmembrane Helix	432	454	0.91
Non-Cytoplasmic	455	456	0.83