YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599451, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSLIFKLLS VTEAAALASY KCLGMGNEKE ADRVAVHAMR KSLNLLEING TVVIGEGERD  60
   61 NAPMLYIGEK VGIGGIDVDI ALDPLEGTTM CAHYKNGAMS VLAIAKKGEF LNAPDVYMKK 120
  121 IAVGPNVPKG VVSLKYDIKT NLYNLAEVRK CNVNELIVMV LYRERHLELI KSIRECGARI 180
  181 KLIDDGDVSA VVSLMKGTHD LYVGTGGAPE GVLAAAALSS MGGYMEGKLI FDTEYLRARA 240
  241 EQFGIKDINK IYSIEEMVKS ESIFIATGIT DSALVKGIRY SQGSFIIESI IIKPASVMYV 300
  301 NNTVPEV

Type	Start	End	Confidence
Signal Peptide	1	18	0.80
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	307	0.99