YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599392, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSSALMYE LKLSMSRKGN LLNAIILFIL IISTALFTMK NVEIIKVLPT ILWICSISAV  60
   61 HMSMCHLFEN DYANGSLEQM LIQESMVELI IFFKILSHWI CVGIPVSIIS MFIDFIILES 120
  121 NIYTTLGLGL SLGISLLVIS FISAVGEALV LGRGSGIIIA QILTLPIMIP VLVYFSLVFD 180
  181 SIINGVYREN LMLLGLIIAG VVPISVIFVS FAIRVAVEYD

Type	Start	End	Confidence
Cytoplasmic	1	19	0.84
Transmembrane Helix	20	39	0.95
Non-Cytoplasmic	40	46	0.70
Transmembrane Helix	47	68	0.83
Cytoplasmic	69	89	0.76
Transmembrane Helix	90	117	0.79
Non-Cytoplasmic	118	124	0.62
Transmembrane Helix	125	146	0.90
Cytoplasmic	147	156	0.57
Transmembrane Helix	157	178	0.90
Non-Cytoplasmic	179	190	0.69
Transmembrane Helix	191	215	0.88
Cytoplasmic	216	220	0.70