YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88657910, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIGKILPT RLISTFLGTG YLPAWQNHWA AVLSLILGYV LFYLIYGMSY VSYGILVTGA  60
   61 VVASLFLKIS LGLIVISIIS IFVFQSNNSA DDRSDIIVVQ IALGQLLVVA LSMPAILAIY 120
  121 NYLAIFYSKI CQNIFMCPSW FNDFMHFLMF FLIPFVFFNI LDIIKPWPIS SLQILYNNCF 180
  181 SIVFEGLVLV IYTLIVMYLV AFICFDLTIR DAVALNSYIF TLLKFR

Type	Start	End	Confidence
Cytoplasmic	1	6	0.86
Transmembrane Helix	7	25	0.63
Non-Cytoplasmic	26	28	0.52
Transmembrane Helix	29	57	0.73
Cytoplasmic	58	63	0.50
Transmembrane Helix	64	84	0.91
Non-Cytoplasmic	85	100	0.65
Transmembrane Helix	101	124	0.87
Cytoplasmic	125	143	0.62
Transmembrane Helix	144	164	0.90
Non-Cytoplasmic	165	181	0.66
Transmembrane Helix	182	209	0.77
Cytoplasmic	210	226	0.73