YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599321, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.86
Transmembrane Helix	7	29	0.86
Non-Cytoplasmic	30	53	0.80
Transmembrane Helix	54	77	0.84
Cytoplasmic	78	84	0.85
Transmembrane Helix	85	105	0.95
Non-Cytoplasmic	106	114	0.83
Transmembrane Helix	115	135	0.94
Cytoplasmic	136	147	0.87
Transmembrane Helix	148	170	0.89
Non-Cytoplasmic	171	179	0.83
Transmembrane Helix	180	204	0.83
Cytoplasmic	205	215	0.84
Transmembrane Helix	216	234	0.90
Non-Cytoplasmic	235	239	0.69
Transmembrane Helix	240	258	0.74
Cytoplasmic	259	268	0.66
Transmembrane Helix	269	290	0.79
Non-Cytoplasmic	291	295	0.71
Transmembrane Helix	296	316	0.92
Cytoplasmic	317	325	0.65
Transmembrane Helix	326	348	0.86
Non-Cytoplasmic	349	359	0.78
Transmembrane Helix	360	382	0.88
Cytoplasmic	383	568	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDSKYLLDI ITLLSAAIVI VVLFWKLNIS PVLGYFVAGT LIGSNGLNLV ESSVIIQNLG  60
   61 EFGVVFLLFL IGIELTFERL IAMRLHVFGF GTLQVIVTAL AIWYISSQFG VDSKGSIIIG 120
  121 GALALSSTAI VLQVLQEKGY QSTQVGRLSI AVLLLQDFAV VPLIVLLPLL TGESHHSIPI 180
  181 SLLYSFVKAA IALTLIFITG RLLLRPLFNT IAAMKSNEIF IATTLLIVLG AAFITENFNL 240
  241 SMALGAFVSG LLVAETEYRH DVEQVVLPFK RLLLGLFFMT VGMSIDIKFV LNKLPIITLA 300
  301 SISLIALKSF IIFILCRFFR FQLAAAIQAG LLLSQGGEFA FILFGLAAEK NVLSSDLAQT 360
  361 LMMITTVTMA FTPLLATLGD WISKLITKKK ISLNSQELIL DTKDLDQHVI VVGFGRVGRM 420
  421 VAKVLVAEHV NYIASDIQPK IVKDGIDEGF PVYLGDLTKL NTLQSMAISR ARMIIIAINN 480
  481 EVTIKKIISL VAKNFPHIII IVRLPDLSNV EIYKELGAHY LIPETYEVGL QLGAVALSNN 540
  541 GFSNHAISLL KDRFRMVNYD AVKNKEDE