YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68171833, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHEKNKAVS DLLEEVTSNA DVDKITLFEL KSALHARGFG VLMLLFSLPL AIPIPVPPGY  60
   61 TTIFSIPLLM FAFQMLLGLQ APWMPKWLEK KSFKRTTLAL IIEKTAPILR KAEKLTKPRL 120
  121 LFIFNSFGEK VIAFISLICA ISIAIPLPLT NFIPAGGVSI MSLGMLNKDG VMVILGVIVS 180
  181 LFGIIVTLMV VILGPKLVVS MFSFLSKFT

Type	Start	End	Confidence
Cytoplasmic	1	33	0.99
Transmembrane Helix	34	54	0.92
Non-Cytoplasmic	55	62	0.72
Transmembrane Helix	63	84	0.91
Cytoplasmic	85	130	0.92
Transmembrane Helix	131	150	0.90
Non-Cytoplasmic	151	170	0.80
Transmembrane Helix	171	194	0.92
Cytoplasmic	195	209	0.84