YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88657770, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNLLTIFRV FAIPAIVCSF YIGDSNSNYI AFVIFIFACI TDFFDGYLAR IWQAQSKFGK  60
   61 LFDPIADKLI VVATVIMLVY IRKITGLTII PVVVIICREI LISGLREFLI SISVELPVIK 120
  121 LGKVKTFIQM AAIAMLMLND SVILYIGETI LYLAAVLTMY SAYVYICIAL KYIYP

Type	Start	End	Confidence
Cytoplasmic	1	4	0.90
Transmembrane Helix	5	23	0.88
Non-Cytoplasmic	24	29	0.76
Transmembrane Helix	30	49	0.94
Cytoplasmic	50	64	0.75
Transmembrane Helix	65	81	0.71
Non-Cytoplasmic	82	86	0.50
Transmembrane Helix	87	105	0.74
Cytoplasmic	106	125	0.64
Transmembrane Helix	126	144	0.79
Non-Cytoplasmic	145	149	0.62
Transmembrane Helix	150	174	0.82
Cytoplasmic	175	175	0.90