YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599153, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDDYDPWNS NNKEDHKSKG YKNSNDINKV IHYFNNTFGS FLKNKKGIRP NNHGKTQFII  60
   61 AFLVMMLLYM GSGFYIVEPE EEAVQLLFGK YHDTVGPGLR YYLPSPIGQV IKLKVKTVNR 120
  121 EEIGSRFYSD STSGHGEGVM LTGDENIVNI NFDVHWRINN AYNYLFKVRD NQVGDTVKNA 180
  181 AESAMREVIG KSSISFAIEG KGRAIISQET KTLLQHILDQ YNMGVEILSI QLKKVDPPEK 240
  241 VINSFRDVQS ARADKEKLIN EAYAYRNQVL PKAKGEAIKI KLDAEAYESE VVNAAEGNTK 300
  301 RFIALYKEYV YQPDAMRNRL YLETMEEILN KNDKVVVSDD LKGMLSYFPL ADPRNSR

Type	Start	End	Confidence
Cytoplasmic	1	55	0.95
Transmembrane Helix	56	77	0.89
Non-Cytoplasmic	78	357	0.99