YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88657668, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFIRYTRS VLPYTVFLFF VLLVCSLYMI FISSPADYMQ GELVRIMYLH VPAAWISLGS  60
   61 YTLMAVFSFI ALIWRNMISA IISHAIAPLG LTFTSICLIT GSIWGKCTWG TWWVWDARLT 120
  121 SMLVLLFLYL GYISLWNFFD NEARSMKAAS IFAIFSAINI PVIKFSVNIW TTLHQPASIL 180
  181 RTNGTTIDIS MLIPLFTMFT TLGVLFCILL ILRSHTLINL RRINSKLILL NNIF

Type	Start	End	Confidence
Cytoplasmic	1	10	0.96
Transmembrane Helix	11	32	0.95
Non-Cytoplasmic	33	52	0.88
Transmembrane Helix	53	74	0.93
Cytoplasmic	75	81	0.85
Transmembrane Helix	82	104	0.90
Non-Cytoplasmic	105	116	0.82
Transmembrane Helix	117	139	0.88
Cytoplasmic	140	147	0.91
Transmembrane Helix	148	170	0.87
Non-Cytoplasmic	171	191	0.88
Transmembrane Helix	192	212	0.95
Cytoplasmic	213	234	0.93