YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88657645, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIISERIYR ISGHVSVLKD SLLSHATLIL ASQVIGVTKI YDIVFNSDIA LTIKSLNSLG  60
   61 IKIKYNKNSK ICTVEGMGVG GFLCSKDILC FNDPSIYMII GSLSNCPFTS FLHGEVNLNI 120
  121 SNVMKPLFLM GARFISNNNK LPAALVGCID MLPIKYTTRE DSVKMAIMFA ALNTYGTTTI 180
  181 VGTTAQDSIV NMLQRFNVAI ECLVDKNSVI SISGQRELYS KNVCIPNDFF CMLSFITVAL 240
  241 ILKGSEITIL DVLFNDKMKN FYKILVKMGG NLFFLNQRKN AVGEEVVDLV VKGSVLQGIE 300
  301 WLFNENFDID EYLFIVMIAA CAEGITVLSG VLNRTLTDKR LRVVIKQLMK CGVMIEIEAD 360
  361 RLIIYGHSNN IFDCGTVDAC YDFKITVLFL TMGMISNNFI KIKNARKTND LFAIIELFNK 420
  421 HGAKIRIA

Type	Start	End	Confidence
Non-Cytoplasmic	1	311	0.74
Transmembrane Helix	312	332	0.57
Cytoplasmic	333	428	0.58