YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599098, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKYSHNLT NEQLVNCYYS MLLMRRFEEK SGQLYGMGLI GGFCHLYIGQ EAIATGIQNA  60
   61 IIDGDSIITS YRDHGFMLSV GTDPKYVMAE LMGKSTGCSK GKGGSMHMFN IEKHFFGGHG 120
  121 IVGAQVPIGT GIALANKYKK NNNVVFVCLG DGAVNQGQVY ESFNMAALWK LPVIYVIENN 180
  181 EYAMGTSVSR SSYITDLYKK GESFGVPGHQ VDGMDLFSVT QAATDAVNYC RANNGPILLE 240
  241 MKTYRYRGHS MSDPAKYRSK QEVEEIKEHK DPITNLKNYL ISNNIISDDE CNKYDKEIRN 300
  301 IVKESVDFSQ NSSEPDAKML YTDIYKD

Type	Start	End	Confidence
Cytoplasmic	1	30	0.61
Transmembrane Helix	31	49	0.56
Non-Cytoplasmic	50	327	0.81