YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599084, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCKIKDIISN FRKYHLLLRL HSVEIILLLI FPSLASIALV SHSVLRACGY MFLCSIGAFI  60
   61 MRPAGCIIND IFDRKIDSEV KRTQNRPLAN NSLSVFQALK ILAILLLCAC VLLVLTNMYT 120
  121 IKIAIVSMVL IVLYPLAKRY FAWPQLLLGI VFNTGILMGC TMTVGHLTLS CVLLYIGCIF 180
  181 WTVGYDTIYA AQDKEYDIKL GLQSTAIKFG NDIRLWIGRL YMITVTMWLS AGIIAVLHPI 240
  241 FYLAILIIAA IFYYQYKKSD FDNPEKCMYM FKVNIYVGLI LFLGTVFGRI L

Type	Start	End	Confidence
Cytoplasmic	1	19	0.91
Transmembrane Helix	20	40	0.93
Non-Cytoplasmic	41	47	0.73
Transmembrane Helix	48	72	0.79
Cytoplasmic	73	92	0.89
Transmembrane Helix	93	115	0.86
Non-Cytoplasmic	116	119	0.62
Transmembrane Helix	120	137	0.79
Cytoplasmic	138	149	0.53
Transmembrane Helix	150	183	0.76
Non-Cytoplasmic	184	227	0.73
Transmembrane Helix	228	254	0.84
Cytoplasmic	255	267	0.84
Transmembrane Helix	268	288	0.90
Non-Cytoplasmic	289	291	0.65