YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88599020, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKFIILLLF FVTGCGVNCI EGSKGISGNS VVVEVSPTVK KVSKVLQPNW IDTELRVSKD  60
   61 QPPMRVAVTG ALNMCPKDFL NPKNLIVPAV SCISDIKDIS YKDESTYQNI KDVCSNASLR 120
  121 TKAANSEYLS GVAHTVSAFR LNKGDAFKVS LIPRKVKVTD CSSAALKELG VIYYSDDEIF 180
  181 EDSNCQQAIP AENICQNGVP KFYVKVNQEC KESGGMAGAI PRLQGTEVSA LVDNTDTPYG 240
  241 NKIFYSEDAK KNWINAPFVY DARIIKNQKV NVETLKKHCT IIKELNEKKI INHVDTISTS 300
  301 QFEYYQKQKA QGDITTDIIK ELIDVINNFT TYDINCVCGT ICNSKSKLVT GKEIATISNY 360
  361 GSDGNCIISG SYEYNKDATF EEISKAKLED ISKNANNSDP IIQGLTAFFG TRVTHKQEKD 420
  421 ARNYYCFPQK VQGGSCYADI SSQNIDSNSL KSNISYAYDS DESVTLRFAV IGEKQKYASY 480
  481 SGGYNIHVER ICNFMYGKKL YMYIGDNPPT IFPGDPGTIE LFVPDPENPE SGTGVYMINK 540
  541 DGSEKKSGKI YLGIDVRGYE NQFDYSSLPG IESANKYFVD FFIKRWNPNF SKVFVMIRDF 600
  601 LLRILYGVPK DTQVDNIAQA LDVARTSKSQ GAIQSIYANQ TGAGSLWRAL QALCSLYIVF 660
  661 TVLGYAIGVV KFTKYDLGVR IAKIAIVVGL ISQGSWEFFS DHFFSIFIQG TSDLVAAFNG 720
  721 ELDGDNSFRF LDTTLGILLT GEVWIRLLTL ILTGPIGWLI FYIIFWAFFV FFMCVIEAII 780
  781 AYLLTIVAVA FLATLAPIFI TFIFFQLTKT LFDAWVKMLV NFSLQPIILF AALAFLNQVV 840
  841 LTVLYKVTSF TVCNQCYLGF DLPTSAVEEG APYDICLVSV LLPVGYSPDL SITESIRESY 900
  901 VQGNGGLLGL PFDIASALIL LLAAHAMRGF KGMSETIAHS ISGSVAGLSA SVYGATQALA 960
  961 SIVGRDQETQ NIIKEAMRNR KSTGKSDVDI VSRSNPNPES RGESVERSGG SDSDLPPKGH1020
 1021 DGGLRTGISD KGDNVPQQPQ SGDDIKEDSK TGRASEQLHN DVSPLSSSSV LDTTPFTLSY1080
 1081 NEMQGADNLD SNPSVTRNDT SADGTSGMDS QDASSDAGSE LHGDGDTGNV ATTQDTGDNE1140
 1141 GDGAQNGSRD NGENAGNASN VTEQDTSSGE NDEVQGGSRD NSESADDASS ITEQDSSSGE1200
 1201 SDEAQGGSRD NSESADDTSS VAEDTSSDES DEAQGGSRDN DENGDSTLSV AEQDTSSDES1260
 1261 DEAQGGSRDN DENADDTSSV AEQDTSSDES DEAQGGSRDN DENADDTSSV AEQDTSSDES1320
 1321 DEAQGGSRDN DENDDSASSV TEQDADSVSD GTEVSTSDGD NNLGNDQSTD NTLDGNENTS1380
 1381 GNNDTDVQEE AGKASSVVES SDSDDSDGRK RGRKDINFLD GPQRKRLYMD EYSSVAEKIA1440
 1441 GHESAIAVEE ESYERGIVKK RGKKDQQE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle