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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88600985, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRVVLGLLL LLSACDMGCI YPGDGVSANF TNVIVPAYLE GMDPSKPSTL WVDSGIKIRE  60
   61 GEEVPFGVIG DIDLCGKLFN RKEFEICSEW NCQVIEVGNR FCANGAPAGI HNPSDLSDAK 120
  121 NKEPLCEKAS TTHERYYVDT YLEVSPGEKV LFELIPVVSV NLVDCDNIPL GFSWYNNEDL 180
  181 KDVKGKKMQL VSGGEVDPVA ICKAGGEVHL QRGGNKLQVF LPPSLKGELL NSALVGNGYT 240
  241 PRSNRVIVGN GEGKWIEAAA VDMRVIVPHI FSDEKFCDAG FKSQVDHEEI RKGKKISWEY 300
  301 KYKDSCDSKK DEGKLKRFET YKVNKMCGNF ISDSTYKDGI YSIRYDEDFD SLNPCFRARR 360
  361 RNKSDLERAW ADLLVAKIGR AGKDKSTLLL SDDEAQLCIY NIGTEETNLY GNRVKRCVDV 420
  421 GEYGGSVPSL ELNTWFTIPR SISGGSPLLL GIAGNEDSSK NSVYSGYRVR VRKSCSYQNG 480
  481 EKLYVYIGDG PPSIAPGVSH PNVHELRFNA DTPKRAVVNP LNIDSSTYSL SFNGSGKVYF 540
  541 GIAGAADSSL VKAVKTGKYL PSEDNKYTVS IVQERWYPNF SGPFNTIYHA IVKLFYGKGQ 600
  601 KNPYGKPEAT GVIVQIYNAI VGKIAPAVQA LIVLYLVTYG LSFLLGIIRD PRSDVVMRVM 660
  661 KVAFILLLVS DYSWKFFGET IFDLFVNSSN ELIYYFTGNL SGKYSPDSTF EFLDRTVGVI 720
  721 ITNQFWLRML ALFLSGPAGW FIMSIILWGV FLFFSCIIEA MVIYLMILIA TGLLFLLAPI 780
  781 FITFLIFQRT KPLFEGWLKM LISFALRPIF IFGTLALLNA VMMATLYGVN NFGVCPGCVV 840
  841 STDIFGSDLC IISSLIPMGF DPGMASMDRF LIPGSTNSGF MGLPVSLVSV IVFLLVAHAM 900
  901 KSFLKITDSM VDMITGTMMG YTGVTGGGSP SDAGHAAYQA MLSVVGLDDA TQSEIGQALR 960
  961 SRARSRRSIT LEVAEDAEKV PSSEDAALEK AERSSLKDSL EDPNIKSTSL NNEGSSNAPV1020
 1021 VTSGAQTDTN REQGIYSLAG APGVRPGEES IPNPIYEGAP PGGEHIHAGI NDVRGQTPYS1080
 1081 LAGAPEVRPG EESIPNPIYE GAPPGGEHVH AEMGKQNTHT LLGPSGAEII REDGSQISPA1140
 1141 VESTDSNEET AEPDNGIRTQ SQAGDDEKD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle