YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP6_NEOSM
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPLKQFEIF PLIRLPEFFG WDINFTNSSL YMVLTVVFAS LFLFAGVFRG KVIPGPMQSF  60
   61 VEIVCSFVLG IIKGSCGKAG SDYFPLILSV FLYVLFANLV GMLPLPMSFT VTSHIVVTLA 120
  121 LAMVVFIFVT LIGLKKQGMG FFAMFLPDGT PNWIAPLMIF LEVCTYLFRP ISLAIRLTAN 180
  181 MIAGHTILKV IAGFVYPTSL LISPLSFLFV VVLIVFEVFI AMLQAYIFVM LTCVYLNDSL 240
  241 FKH

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.68
Transmembrane Helix	28	48	0.92
Cytoplasmic	49	56	0.58
Transmembrane Helix	57	76	0.77
Non-Cytoplasmic	77	82	0.65
Transmembrane Helix	83	105	0.88
Cytoplasmic	106	111	0.64
Transmembrane Helix	112	134	0.90
Non-Cytoplasmic	135	152	0.70
Transmembrane Helix	153	173	0.80
Cytoplasmic	174	185	0.64
Transmembrane Helix	186	216	0.73
Non-Cytoplasmic	217	217	0.36
Transmembrane Helix	218	236	0.80
Cytoplasmic	237	243	0.67