YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600972, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLVSAVLAF SLSSTLILFL GIFFTLLLRS KRMFVLCAAI ALVATSMVTA LIILSLVTQT  60
   61 VSFFRVVSPT DFFFGTVWAP NGTIVDGQVE KLFGILPLLF GTTMVALIGS IVGTPIGIGA 120
  121 AIALTYFIPK KVRNVIKPII EIMAGIPTVI YGYFSLTFVP ALVQKLGHLL HLNISTESAL 180
  181 SAGIVIGIMV IPLITSLTDD LLRTTPKSLY YGAAALGSTQ TEIILRAVLP NCLPGLVAIV 240
  241 LLGFSRALGE TMVVLMLTGI SANIDYNILH TVTTVTVQIV TILTGDQTLN TEESLSAYAL 300
  301 GMTLFILTWV LNAVSMSMSK RHVH

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.93
Transmembrane Helix	6	27	0.94
Cytoplasmic	28	33	0.85
Transmembrane Helix	34	57	0.90
Non-Cytoplasmic	58	102	0.89
Transmembrane Helix	103	128	0.89
Cytoplasmic	129	138	0.88
Transmembrane Helix	139	162	0.81
Non-Cytoplasmic	163	177	0.79
Transmembrane Helix	178	198	0.90
Cytoplasmic	199	222	0.72
Transmembrane Helix	223	249	0.72
Non-Cytoplasmic	250	294	0.60
Transmembrane Helix	295	316	0.90
Cytoplasmic	317	324	0.84