YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600867, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKKYASLI RFQSLGGMWL CFFPALFVVA LLGNSFYSFL WIPFFLLGAF LVRSAGCIAN  60
   61 DIADRNIDGK VKRTASRPIA SGEVRVTEAV LLFLILLVLA TVLLAFLPLE ATALGAFTIV 120
  121 GVVVYPFSKR YFAYPQLLLA VIFNVGALFA SIVVVNSIHA SALFVYLACF FWTLYYDTIY 180
  181 GHQDKCYDVA LGVHSLSLGK FGSREWLKKY ARLALSFLAF SAVLPGLNLL YYIGLAALFL 240
  241 VEEKFTESIN LDDPKNCGMA FKRMNFVGVL IFLIILLGRL

Type	Start	End	Confidence
Cytoplasmic	1	11	0.89
Transmembrane Helix	12	33	0.88
Non-Cytoplasmic	34	39	0.72
Transmembrane Helix	40	63	0.84
Cytoplasmic	64	83	0.91
Transmembrane Helix	84	106	0.86
Non-Cytoplasmic	107	110	0.58
Transmembrane Helix	111	128	0.77
Cytoplasmic	129	136	0.53
Transmembrane Helix	137	155	0.85
Non-Cytoplasmic	156	157	0.38
Transmembrane Helix	158	176	0.67
Cytoplasmic	177	212	0.58
Transmembrane Helix	213	235	0.87
Non-Cytoplasmic	236	258	0.66
Transmembrane Helix	259	278	0.88
Cytoplasmic	279	280	0.62