YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600802, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	32	0.88
Non-Cytoplasmic	33	39	0.93
Transmembrane Helix	40	63	0.88
Cytoplasmic	64	79	0.85
Transmembrane Helix	80	103	0.84
Non-Cytoplasmic	104	115	0.83
Transmembrane Helix	116	134	0.95
Cytoplasmic	135	142	0.88
Transmembrane Helix	143	164	0.90
Non-Cytoplasmic	165	184	0.83
Transmembrane Helix	185	204	0.90
Cytoplasmic	205	218	0.83
Transmembrane Helix	219	239	0.93
Non-Cytoplasmic	240	270	0.87
Transmembrane Helix	271	293	0.90
Cytoplasmic	294	302	0.90
Transmembrane Helix	303	324	0.89
Non-Cytoplasmic	325	329	0.71
Transmembrane Helix	330	351	0.91
Cytoplasmic	352	360	0.78
Transmembrane Helix	361	379	0.81
Non-Cytoplasmic	380	380	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVSKSTQVA IASLTVFAIF FGAGNLIYPT FVGLETKSNF AYGFLGFAST GIFLPLLALI  60
   61 SMIKAGCNMD KFFSLAGKQV GTILVMLILL LMGPLGGIPR CIIVSFDALT VMSSSIRFLH 120
  121 FNLFFGVLTF LLVLRDSEVV QIVGKWLTPA LIMGILVIVI AGISSNQAMS DATLSRFPSF 180
  181 TFAVFEGYQT MDACAAIFFA KIILDYFKKE APEGNALNYS LLSSILGFFL LGIVYAALLF 240
  241 LGAKYATNLD EIPKASLFNS LTSLVAGKAS SVVVAFTVFF ACLTTVIALV QLISKWLTER 300
  301 TGIDLRLSVC GTVICSMISA SFGFQALTTF LVGILSLLYP ALIVLILCNL ASSSSQYVRK 360
  361 YSPVIFWLTA AVSAYVSIGV