YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600688, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNFLDTSI SKKCIFSLMF ALCVLYSFAF YFVFSSPIDQ LHGNLVRIMY IHVPAAWLGV  60
   61 GLYCVIGLLN LLYLSFSLPR LGVIAYALAP IGMVFSLICL ITGGLWGKPI WGAFWVWDAR 120
  121 LTSMLVLFFL YLGYYILWDY KEFNIKLAAI LNLVGLANIP IIKLSVYFWA TLHQKSSFIR 180
  181 SGGISIHPSM LTPLLLMFLA SFVLTLLLWY FNARATLNLK KIEKLLLYEK STE

Type	Start	End	Confidence
Cytoplasmic	1	13	0.95
Transmembrane Helix	14	34	0.94
Non-Cytoplasmic	35	52	0.88
Transmembrane Helix	53	74	0.93
Cytoplasmic	75	82	0.85
Transmembrane Helix	83	106	0.92
Non-Cytoplasmic	107	115	0.87
Transmembrane Helix	116	138	0.88
Cytoplasmic	139	147	0.87
Transmembrane Helix	148	170	0.89
Non-Cytoplasmic	171	189	0.92
Transmembrane Helix	190	211	0.94
Cytoplasmic	212	233	0.96