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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88600679, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKIKNFLY ILSSITCRLV LLFLMVCSLK SGEEIPSFTT AAELHSSKFI FFGRSAATYL  60
   61 MTLIGLGFYP LCTLLVCSFI LSREKVILLS VLILILITLL SKVPPSDEWL FGSYGGIMGS 120
  121 LLASYLDHPH ASHFLIALTI ILSLWIFNFL TIRKIKKAIR KAFCTVKVLA SLPLLLLKKK 180
  181 LKSKSHDDKG NAVTQKGHIH NETPEEDLPI KCTYNFIKEK EPHVNEEDKG QTFSEINKKA 240
  241 SHEVLTPTIK PKKKPSLKER MESSGTKSFS QKDSIPAHEE RIETEKTSKS SSLKESSIMR 300
  301 KFTSHEIRKK FKSGTFAIET NTIPPLELLK ERSPEPKQLE DTQKEGENLR KVLEDFKIEC 360
  361 KMVEITVGPV VTLYELQPAA GIKSSSIIAL SADVARTMSA ISARISIIPG RSVIGVELPN 420
  421 KHREVVLLRE ILESGEYQAA DKVLPIALGK SISGEPVVVD LAKMPHLLVA GTTGSGKSVA 480
  481 INTMILSLIY KLEPDKCKLI MIDPKMLELS IYNDIPHLLS PVVTDPKKAV VALKWVVKEM 540
  541 EERYRLMTKL SVRNIESYNK KAEEFIKRGK LFEYEETIGI DPTTKEKLTR TQSIELEKLP 600
  601 FIVVVVDEMA DLMLVAGKEI ETSIQRLAQM ARASGIHIIM ATQRPSVDII TGVIKANFPT 660
  661 RISFAVTSKI DSRTILGEQG AEQLLGRGDM LYMAAGQAPV RIHGPYVSDP EVEKIAEYLK 720
  721 KSGSPQYNEN IVLEEESDED TAVSVAGGDD FNSLYAQAIE IVRKDNKVSI SYIQRRLSLG 780
  781 YNKAAKLVEK MEEEGVVSPP NNAGKRTLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle