YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88608481, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLMGSKAG KLGQEIASLL NLAVVRAQAN RFPDGESDVL VHHEDVIPGT KVLVIQSLCS  60
   61 DADIMEFLFI VDALNRLGVR DIALVSPYFG YARADRIVAP GSAISAKVVA RLIGERISLL 120
  121 FVLDVHFPQF EGFFEIPVYN ILPWTLLKES VHVGHNMALV APDVGAVKKL KPLSEELGTN 180
  181 LVIMNKRRPR ACLSEVTEVV GEIHGRDCII VDDIVCGGGT LCNSAAKLKE LGAKSVAAFV 240
  241 THGVFSGSAR QKIMDSQIDR IVVTNSIPGP GCEAKGKIEI ISAADLLARK IHSVYLDVNT 300
  301 KSPNC

Type	Start	End	Confidence
Signal Peptide	1	29	0.75
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	305	0.99