YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600647, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGNKENNDL EEFSIGDESV EVSDRGSGIQ GGSIKKKLIY ILIVVVGFFF AYKFFSSESQ  60
   61 KEDTHIPARE TQVEERVVSD KIKTDTKEGF LVPKDDAALV LLPPKISDLP KLPAIPVPAI 120
  121 PEKPPVVPTK PGAGPSLPSF FPQPPGSASS AMDPPGKVSS GINKYNRSTP MIAFGGGGVT 180
  181 SSEGQSSGIS ISDPASLLDP SKLGELRRSL QQRDTTAPED KELTRTPGQI VAGYVGDLDY 240
  241 VLTEGKMLDA VLETAVNTDL KAKVRAVVSR DVFSESGNQI LIPKGSRLIG SYSTDISFTQ 300
  301 SRVDITWSRI ILPNGIDINL GGFDGVDSLG RAGVRGAVNN KVSNVMSTSI LLATARVASG 360
  361 MIVDKIMGTN KSQMNVPKNR PSLKDENADE SKVKGSPGAI IAMQAIQDAS KQVTDYVKRT 420
  421 ADVNPTLTVN QGTRLKVFVN QDVVFPRAAF QEYKVLN

Type	Start	End	Confidence
Cytoplasmic	1	37	0.91
Transmembrane Helix	38	55	0.90
Non-Cytoplasmic	56	457	0.99