YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88608475, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCSIVLPYL DPVAFSFGPI TVRWYAFAYI FGIVYGYLFV SKHSNLTRKE LDTLFYQATL  60
   61 GIIFGGRLGY VIFYNSTYYI ANPLEILMLW RGGMSFHGGL LGLILALFLF SYQHSYKFFY 120
  121 LTDLIAPTAS LGIFLGRIGN FVNAELYGRQ TTRSWGVIFS NGDGLPRHPV QLYEGFLEGF 180
  181 LLFLATQLLF FKTPILKYPG MLSGIWLSLY GSTRIILENF REPDPQIGYF FHFITMGQIL 240
  241 SLPMIGMGVV MILIATKTFN EYVPGK

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.88
Transmembrane Helix	21	41	0.91
Cytoplasmic	42	52	0.87
Transmembrane Helix	53	74	0.89
Non-Cytoplasmic	75	92	0.75
Transmembrane Helix	93	112	0.92
Cytoplasmic	113	118	0.80
Transmembrane Helix	119	138	0.88
Non-Cytoplasmic	139	171	0.80
Transmembrane Helix	172	191	0.79
Cytoplasmic	192	197	0.65
Transmembrane Helix	198	217	0.76
Non-Cytoplasmic	218	233	0.68
Transmembrane Helix	234	256	0.88
Cytoplasmic	257	266	0.72