YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600635, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVAVVLLN LGGPDSLDAV RPFLFNLFCD RRIINLPNPF RFCLAWWISR KRFREACKIY  60
   61 SKMGGKSSIL PETNMQAKLL GDLLGPQYEV FVAMRHWHPF IQQSATRING GEFAKAILLP 120
  121 LYPQFSTTTS LSSIEQCLKV LRIPTQVVCC YYDNQLFIEA HVETILPIYA EACAFGKPII 180
  181 LFSAHGLPLS VIKAGDPYKF QVEEFVRRVV AALKIENLDW ELCYQSRVGK AKWLCPDTAS 240
  241 TIQSHSERPI VVVPIAFVSE HSETRVELDI EYALLARAGY FRVPTLSSHP KFIRCLAELC 300
  301 LNFCEKVESE CSMKHKMCFC RFETG

Type	Start	End	Confidence
Signal Peptide	1	19	0.67
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	325	0.99