YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88608452, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHYCDLKAR VISAAVLLFL CALAICSGGY AVYSSVLLLA VLSYQEWQDM TANKGVVLRC  60
   61 LGLFVAILPN AALIGIHIED VEILIWLIVC VVSNDVGAYF IGRIIGGVKL CKSVSPNKTV 120
  121 SGFLGGLLST FVCGSTFAIV LGLSMNFVLL TLPIAVLATI GDLFESFIKR TCSVKDSGTL 180
  181 LPGHGGILDR VDGFIFSAPF LFFCL

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.54
Transmembrane Helix	12	42	0.76
Cytoplasmic	43	54	0.56
Transmembrane Helix	55	76	0.81
Non-Cytoplasmic	77	82	0.63
Transmembrane Helix	83	105	0.86
Cytoplasmic	106	119	0.71
Transmembrane Helix	120	141	0.86
Non-Cytoplasmic	142	146	0.55
Transmembrane Helix	147	168	0.67
Cytoplasmic	169	205	0.73