YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600581, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDLPNLLTA LRIAIIPVFC LSFYIQSRFS WVITVGIFSI ASLTDFFDGY LARTLKAQSK  60
   61 LGKLLDPIAD KMIVSTAIVM LVHMQYITGV QLIPAIMIIC RELFIAGLRE YLARDSVAFP 120
  121 VNRFGKLKTI SQMVAILLYL LNKEWIPDIL PTFFIWIAGL TSMASAYLYL HENKEELLKS 180
  181 LS

Type	Start	End	Confidence
Cytoplasmic	1	7	0.90
Transmembrane Helix	8	26	0.87
Non-Cytoplasmic	27	31	0.64
Transmembrane Helix	32	52	0.74
Cytoplasmic	53	67	0.66
Transmembrane Helix	68	87	0.63
Non-Cytoplasmic	88	89	0.39
Transmembrane Helix	90	105	0.60
Cytoplasmic	106	123	0.47
Transmembrane Helix	124	141	0.54
Non-Cytoplasmic	142	148	0.77
Transmembrane Helix	149	171	0.89
Cytoplasmic	172	182	0.90