YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600569, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILFMGSSA FAVPTLLKLI ADPQFEVLEV YTKPPKPKGR GLLTSMTQVH STSLEYGLSV  60
   61 KTPFSLKGEE LPPCDVIVVV SYGLIIPAKL LSHPKLVPLN IHPSLLPRWR GPSPIQYTIL 120
  121 KGDKEAGVSI IRVTPELDAG AIYIQKAIPL DGTETYSILH DRLANLGASM LHGVLETLNT 180
  181 ISPVPQAEEQ ATYSKKLPNS VSIDFSEGIA SFLRKLRVFG AVSIELFGKH IKIVEVCKTA 240
  241 DSPSADVGVK KDSKKILLQF KDGCATIKTV KPENKREMST EDFLNGIQSK YGTHADSHVF 300
  301 IDYKENY

Type	Start	End	Confidence
Signal Peptide	1	21	0.82
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	307	0.99