YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600538, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.85
Transmembrane Helix	6	23	0.94
Cytoplasmic	24	42	0.88
Transmembrane Helix	43	66	0.87
Non-Cytoplasmic	67	73	0.74
Transmembrane Helix	74	92	0.94
Cytoplasmic	93	119	0.94
Transmembrane Helix	120	139	0.92
Non-Cytoplasmic	140	155	0.72
Transmembrane Helix	156	174	0.92
Cytoplasmic	175	183	0.74
Transmembrane Helix	184	205	0.90
Non-Cytoplasmic	206	229	0.86
Transmembrane Helix	230	248	0.92
Cytoplasmic	249	264	0.78
Transmembrane Helix	265	284	0.92
Non-Cytoplasmic	285	308	0.86
Transmembrane Helix	309	331	0.84
Cytoplasmic	332	354	0.86
Transmembrane Helix	355	376	0.93
Non-Cytoplasmic	377	382	0.88
Transmembrane Helix	383	404	0.94
Cytoplasmic	405	410	0.92
Transmembrane Helix	411	430	0.93
Non-Cytoplasmic	431	438	0.73
Transmembrane Helix	439	461	0.87
Cytoplasmic	462	468	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYTHLLVVG LYLLCIFLFG FVRKRVSASF KEYILANRSV HEIITGISHV SSEISVGTFT  60
   61 VVASMIYTTG FSRLWVDLGF FVFSILSWRL LAGRLRVQSE ESKDALTIPQ YLANKFDSKT 120
  121 VGIFASLIIT LFTTTYIGAN MLGLTKVLSK VVSLESNLVA VAVLIVTLLY TTVGGFRSAS 180
  181 HVNVLQGAIM LLATCILPLS LLIKFGLEPL TTFLKQSGSS AVGHLDITQA VFYFSFASVM 240
  241 FGTPHTIGKF LAIKSPDKLN TARNTSIIIN IIIYLGIAIS AVYGRKLLPS MKDTEMLLLN 300
  301 LSEMFTSPLY GSMIIIAILA AVMSTIDAQL ISSASCIAND IYRHITSNRN DIHLIFATKL 360
  361 MIIFVGALAL SISLIFNQSV GKLAIFSLTG LGASIGPVIL FSLYTKTRNK IPALLGLTSG 420
  421 TTATILLTIF NTSDIHYNML PALCITAVVM LASSCITGRT VKCVESNN