YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COXX_NEOSM
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.89
Transmembrane Helix	24	42	0.95
Non-Cytoplasmic	43	50	0.72
Transmembrane Helix	51	72	0.97
Cytoplasmic	73	92	0.95
Transmembrane Helix	93	112	0.96
Non-Cytoplasmic	113	118	0.75
Transmembrane Helix	119	140	0.91
Cytoplasmic	141	147	0.87
Transmembrane Helix	148	167	0.93
Non-Cytoplasmic	168	173	0.78
Transmembrane Helix	174	194	0.89
Cytoplasmic	195	215	0.89
Transmembrane Helix	216	238	0.83
Non-Cytoplasmic	239	243	0.77
Transmembrane Helix	244	265	0.90
Cytoplasmic	266	272	0.95
Transmembrane Helix	273	295	0.89
Non-Cytoplasmic	296	302	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQVVSKTDW LTVRAYFALL KPRVVSLVTF TAVTGAVLAY FSGYHAPFFS VFTAIFCIAV  60
   61 GSGAAGALNM YYDRDIDAIM SRTSKRPIPQ GKISPEAALV FGLVLFALSV LLMELAVNHL 120
  121 SAVLLSVAVF YYSVIYTVYL KRRTPQNIVV GGGAGAFPPM IGWAAVANHI GVESLVLFLI 180
  181 IFLWTPPHFW ALALKNSGEY EAAGIPMLPV TSGVKATKMQ ILCYSVLLFI TSILPYLLRF 240
  241 SGGTYMIVAF ILGLVFLYYA INVYLDEKKC MKLFYYSVLY LFLLFGVFIL DAALSTALGM 300
  301 LI