YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88608217, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSGSFVRLR RTRRNKIIRD LVAETTLSAS QLILPLFVTN GSNIELQVNE MPGVYAHSID  60
   61 ILKKIVESAI TVGVRSIMLF PRDPGKRSFE AEEAYNPENL ICRAVRALKR DFGGDLVIIT 120
  121 DIAADPYTID GHDGFYRDGK ILNDETLELL IKQALVQAAA GSDMLAPSDM MDGRIFAIRN 180
  181 ALNLAEFDEV PIVSYSAKYA SNFYAPFRDA LGSTNIILDK RSYQMDYRNS KEAMREIEVD 240
  241 INEGADIVMI KPASFYLDII KMATDRFCVP IFAYQVSGEY KMLVQYGGLE VLLESLIAIR 300
  301 RAGAAGIVTY AAIEVAKYLP S

Type	Start	End	Confidence
Cytoplasmic	1	20	0.61
Transmembrane Helix	21	39	0.62
Non-Cytoplasmic	40	321	0.96