YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88608068, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.86
Transmembrane Helix	6	26	0.93
Cytoplasmic	27	32	0.76
Transmembrane Helix	33	52	0.86
Non-Cytoplasmic	53	58	0.83
Transmembrane Helix	59	78	0.93
Cytoplasmic	79	86	0.85
Transmembrane Helix	87	109	0.91
Non-Cytoplasmic	110	115	0.78
Transmembrane Helix	116	136	0.95
Cytoplasmic	137	148	0.89
Transmembrane Helix	149	171	0.90
Non-Cytoplasmic	172	179	0.84
Transmembrane Helix	180	205	0.83
Cytoplasmic	206	216	0.85
Transmembrane Helix	217	236	0.88
Non-Cytoplasmic	237	240	0.77
Transmembrane Helix	241	259	0.55
Cytoplasmic	260	266	0.53
Transmembrane Helix	267	288	0.86
Non-Cytoplasmic	289	294	0.47
Transmembrane Helix	295	317	0.87
Cytoplasmic	318	324	0.44
Transmembrane Helix	325	345	0.74
Non-Cytoplasmic	346	355	0.49
Transmembrane Helix	356	383	0.70
Cytoplasmic	384	578	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDDGITLFQ VIALLSTAVL VVALFLKLNI SPILGYFVAG AVLGTHGFKI VTFSSPMETF  60
   61 AEFGIVFLLF LIGLELTLDR IMSMRLHVFG LGTLQVIITA LLIILICRIF GNSSSASIII 120
  121 GCAFALSSTA IVLQVLQETG MESNQVGRLS IAVLLMQDFT VVPLLVLVAL LGNNAPQNLL 180
  181 LPIAMSLIRA GLVLLLIFVA GRLLLRPFFK IIASTKSSEL FIATTLLIVL GAAYITEKLE 240
  241 LSMAMGAFVA GLLLAETEYR HEVEQVIFPF KSLLLGLFFM TVGMSIDLRM LVENIGLITG 300
  301 IALALMTLKA SIVIGLAKLF GFKTGPAINA GLLLAQGSEF ALILFKLDSS TTILDASMVN 360
  361 ILVSSVTMSM AFTPLFSSIG TMVANKLEAP DRIVEEDELI QLMRASVADI DNHVVIAGFG 420
  421 RVGRMVARML AEERINYIAI DVDSKIVEKA QDEGFPIFKG NINKRATLDA IAADRASTIV 480
  481 LSMQNGVTSK KAVALIGQSF PHATIVARVA DFSDIKTYRK LGAHKLVPET YETGLQIGAE 540
  541 VLQSVGLGSF AIASLKERFR ACDYAIPKSI AKEEEPPS