YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88608046, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKIVVFYLM LCCMLLSVQP AGAQAASGTG DVVSGVICNI VTQLSGPISQ AIATLVIIIT  60
   61 GYSFFVGKVS IGMLFIVAAG IMFVFGAQTI MGWILGDGKA YECKGAKVVQ GTSGK

Type	Start	End	Confidence
Signal Peptide	1	25	0.95
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	45	0.91
Transmembrane Helix	46	66	0.73
Cytoplasmic	67	70	0.66
Transmembrane Helix	71	92	0.85
Non-Cytoplasmic	93	115	0.77