YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607987, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.85
Transmembrane Helix	12	35	0.84
Cytoplasmic	36	60	0.88
Transmembrane Helix	61	85	0.84
Non-Cytoplasmic	86	91	0.77
Transmembrane Helix	92	115	0.87
Cytoplasmic	116	139	0.92
Transmembrane Helix	140	160	0.93
Non-Cytoplasmic	161	173	0.82
Transmembrane Helix	174	193	0.93
Cytoplasmic	194	201	0.74
Transmembrane Helix	202	223	0.92
Non-Cytoplasmic	224	244	0.81
Transmembrane Helix	245	265	0.63
Cytoplasmic	266	301	0.80
Transmembrane Helix	302	329	0.82
Non-Cytoplasmic	330	350	0.90
Transmembrane Helix	351	373	0.93
Cytoplasmic	374	390	0.85
Transmembrane Helix	391	411	0.92
Non-Cytoplasmic	412	417	0.73
Transmembrane Helix	418	438	0.91
Cytoplasmic	439	445	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDIFFTLQG YFLQFFVIPM LICVGFWVSC KMGWLHILKI PIALKCLFAP AEGCRKNISS  60
   61 FSAFSAILGG NLGVGNLSGT AIALATGGPG SIIWMIIIIL FTASIKYVTC YLSLVYRTKV 120
  121 GTRFIGGPMY FLRDGLKSKV LSLFFCIGLV CTATIGGGLV QVNSLALPMD YLHIPRIYGG 180
  181 LIFTVLVALV TFGRLRFFTQ VVSFVVPFMA IGYLGVSLYI LVLHADKIPN ALLLMLTSIW 240
  241 SRTDIQGGVV GFAWMQFLTT MQMGISRGIF ASDIGFGLEG ILHANVKQEE GHKLPLEIEQ 300
  301 GLIGVISPFI VLLVCFVTAL VLMVTGVAWG PFESTNMCFE AFRVGAESDV AGYLLIVVLF 360
  361 CFAFTTVLTW SFCAQCAFEY LTNYNPKVLK LWKVFFVLVL PFGALSEVYF LWRIVDLTSA 420
  421 IMLVTNLIGI VFLAGGVTHE SNNNV