YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607966, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDTIPLILK KLTGEIPEQD RIQNQKELVD AFINAKSEVQ EHFMHKHLIH HTYILAEIPT  60
   61 ELLRRIVETV GVRGFAQIIT SLPVDEIVDV LEEIEQDFVK EIVKFFPSKL AKVIKEILAY 120
  121 PEESAGRLIH KDFIVIPKDW SIEQVLQFIR VQKQLPKYIS EIFVVDEENR PIGSVSLNDI 180
  181 LCAKSRSLVK ILMQTNIKTV ETGQDQEEVA RLFRDYSLHS IAVVDKNQRI VGVISIDDVV 240
  241 DVISEEAEED ILHAGKVSES DINSDVANTV MRRIKWLIVT FLSINFSSYI IGFFQLTLQQ 300
  301 HVELAILMPI IAAMGGNAGI QASTVAVRAL ITKRFCQGNA LRLFVKELIV GLCNGLVMSA 360
  361 LMIVIIALRF HNLALESTFL ISITLVFALA TSFGAAIPFI IEKFGGDPAL SSSIITSSFT 420
  421 DILAFVVLLS TASIILV

Type	Start	End	Confidence
Cytoplasmic	1	275	0.99
Transmembrane Helix	276	298	0.89
Non-Cytoplasmic	299	304	0.90
Transmembrane Helix	305	327	0.91
Cytoplasmic	328	347	0.85
Transmembrane Helix	348	370	0.92
Non-Cytoplasmic	371	378	0.82
Transmembrane Helix	379	401	0.93
Cytoplasmic	402	412	0.85
Transmembrane Helix	413	435	0.88
Non-Cytoplasmic	436	437	0.80