YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598959, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKRCIEKLK TRLSSCKVRA VDRNFLIRLV TAGFWGGAFV VGLSYGGVLF YLLLFSLAMV  60
   61 SSFEWHQMTC GHRWFYIPAV AMIALPYASM AYIYTLPHGT IILSWLILSI WSTDTAAYFL 120
  121 GRTLGTRKII PAISPGKTWV GLWAGIAFSA VSTLVMSVIF GIFYVPHSIL IGAVIAVVAQ 180
  181 CGDVTESAVK RMCKVKDSGF IVPGHGGVMD RMDGFIFTAP LVAYYVKHFS KFFIG

Type	Start	End	Confidence
Cytoplasmic	1	20	0.66
Transmembrane Helix	21	43	0.70
Non-Cytoplasmic	44	46	0.48
Transmembrane Helix	47	65	0.81
Cytoplasmic	66	73	0.83
Transmembrane Helix	74	94	0.94
Non-Cytoplasmic	95	100	0.80
Transmembrane Helix	101	121	0.93
Cytoplasmic	122	138	0.89
Transmembrane Helix	139	163	0.88
Non-Cytoplasmic	164	168	0.60
Transmembrane Helix	169	184	0.61
Cytoplasmic	185	235	0.56