YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598915, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.65
Transmembrane Helix	5	23	0.63
Cytoplasmic	24	31	0.72
Transmembrane Helix	32	53	0.90
Non-Cytoplasmic	54	76	0.90
Transmembrane Helix	77	99	0.93
Cytoplasmic	100	109	0.96
Transmembrane Helix	110	129	0.94
Non-Cytoplasmic	130	136	0.76
Transmembrane Helix	137	156	0.93
Cytoplasmic	157	165	0.81
Transmembrane Helix	166	188	0.93
Non-Cytoplasmic	189	207	0.91
Transmembrane Helix	208	227	0.94
Cytoplasmic	228	241	0.71
Transmembrane Helix	242	261	0.89
Non-Cytoplasmic	262	278	0.79
Transmembrane Helix	279	300	0.90
Cytoplasmic	301	311	0.72
Transmembrane Helix	312	332	0.90
Non-Cytoplasmic	333	340	0.67
Transmembrane Helix	341	360	0.90
Cytoplasmic	361	372	0.82
Transmembrane Helix	373	395	0.83
Non-Cytoplasmic	396	411	0.83
Transmembrane Helix	412	433	0.90
Cytoplasmic	434	459	0.89
Transmembrane Helix	460	480	0.90
Non-Cytoplasmic	481	495	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDHLVILQV LLPLLSATVC SLLRCRVSLI QMFTCGVVTG SFLISLLLFF QVYSGQPIVY  60
   61 KVGGWGLPYG IELRVDLLSA TMMLLVTFIG VMSTIYGIYP SRKEIPAEKV SKFYAAFLLS 120
  121 FGGLLGILVS NDAFNVYVFL EVASISAYVL VAMGVHKGSL VSSFEYLIIG TVGATFYLLG 180
  181 IGFLYAATGT LNMGNMFMML QELPVDRTVY IGVFFVMLGL VMKAALYPFH GWLVRAYSSS 240
  241 PAFIAVFLSG TATKVMIYLM IRIVYGVFGA NLVFTELPFG KMLLAVAALA IIVASVLAAM 300
  301 SKGISDVLSY SSVANIACVI FAISVNTYAG LAAAVTYMVS HSVAKSALFM VSGGISYHFG 360
  361 RGNVEKCLSL SRVLPGITAA YVLLSLSLVG MPPTMGFVAK WHMLSSFVSA RAWEGILALS 420
  421 VGSVCSVIYT WKVIEYLYFT PRMVEKCAND IAIKTPKAMT LCMWVMACIG LAVGAYPIPL 480
  481 TAISEQIAIT LCQIS