YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607783, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLDAKPVY KPFDYPWAYD AWLCQQRIHW LPEEVPLADD VQDWKTMLSE KEKNLLVQIF  60
   61 RFFTQADIEV NNCYMKHYSN IFRPTEICMM LSAFSNMETI HVAAYSYLLD TIGMPEVEYQ 120
  121 AFLKFEVMKK KYDYMQRFEE CRRGDKRHVA KTLAVFGAFT EGLQLFASFA ILLNFQRFGK 180
  181 MKGMGQIIAW SARDESLHTD SIIRLFNTFV HENGEIWDDD LKQELYDACK VIVMLEDEFI 240
  241 DLAFALGDVE GLSACEVKRY IRFIANRRLK QLHLEPIYDV AENPLPWLDE ILNGVEHTNF 300
  301 FENRVTEYAR AATEGTWEEA FED

Type	Start	End	Confidence
Cytoplasmic	1	151	0.50
Transmembrane Helix	152	171	0.55
Non-Cytoplasmic	172	323	0.85