YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598826, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSRVKKVFG ALVPYSQLIR LHSCEISLLA TFPTCASIVL ASNSLYSVLK LFVLVAIGAL  60
   61 VVRSAGCIIN DIFDRNIDIH VHRTKSRPIA CGRLKVREGL CALAVLLCIA GVILLFTNKL 120
  121 SLYLSIICFC GVVLYPLMKR FFSYPQFVLG IVWNFGILIG SAMAANEVKF GSILLYIGCI 180
  181 FWTTAFDTIY AHQDKVDDAR LGLGSTALKF GDNTGLYVKR LYILTITMWV CAGVVSSLSW 240
  241 PYYVFILKSA GVFYYQWRKT DFDNPARCMY MFKTNIYAGI LLFLGVCLGR IV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.93
Non-Cytoplasmic	42	50	0.71
Transmembrane Helix	51	73	0.90
Cytoplasmic	74	93	0.97
Transmembrane Helix	94	115	0.93
Non-Cytoplasmic	116	119	0.84
Transmembrane Helix	120	138	0.90
Cytoplasmic	139	146	0.73
Transmembrane Helix	147	165	0.94
Non-Cytoplasmic	166	171	0.79
Transmembrane Helix	172	191	0.88
Cytoplasmic	192	222	0.86
Transmembrane Helix	223	244	0.89
Non-Cytoplasmic	245	269	0.81
Transmembrane Helix	270	291	0.81
Cytoplasmic	292	292	0.86