YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598809, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGVGRIFR YTLFLYYGIS LTDLRSRGFC MDTGKDRRAV SDILEEVSVQ GSADTVTLYE  60
   61 LKMILRDRGF GVLMLLFSLP LSIPIPVVPG YTTILSLPLL LFSMQMLMGM SIPWLPAFLE 120
  121 RKSFKRSFLA AVIEKTSPFL RKTEKWTKPR MLFIFCNVGE RTIAMLCLLC AISIAIPLPL 180
  181 TNFIPAGGIS AMALGVLNKD GVLVIVGVLL AFLGISVTSV VLIAGPKLVM GMFSFIYKFF 240
  241 VI

Type	Start	End	Confidence
Cytoplasmic	1	68	0.96
Transmembrane Helix	69	88	0.93
Non-Cytoplasmic	89	96	0.66
Transmembrane Helix	97	118	0.92
Cytoplasmic	119	161	0.90
Transmembrane Helix	162	181	0.86
Non-Cytoplasmic	182	201	0.72
Transmembrane Helix	202	225	0.90
Cytoplasmic	226	242	0.78