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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88598808, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRFVPIIFI LLFMLAGCGY HGCISQANVY EDTVRSVVFA NSGEKGQKDS SKYWTKVDFP  60
   61 LSGKKLDLQI EPHHLDFCEN AQIDVMELRV ANSDPITMGK NREFKFTFPV VIMPGEEIRF 120
  121 FLNPVNNFTI DDETCRNGKA DIRVSDVGAC LSSDIGNKYP LYFSSKLGGG SGYYNSWYKV 180
  181 AKGEAPYITD GIPEYLHISG GIVKPSSMEK LDDEHEKLLC FNQADLEAHV DKLLKDEKNS 240
  241 SQDSKEGAKN PAAEKEKRDK KLAEVRAKVR GVREKFKSSM DAYSLNVHCK KLCSGIIDKS 300
  301 QGCEGYHKLL QVQGEEERDV IPFVKLKGNS FALSKLEKKE LPKGMEKAQV PKEFARDFED 360
  361 SKLEQAKATG TALGQSEEYL VLNRAYEYKT DAAARGFILK SSSKRADEIS LLVEVPKEVS 420
  421 GDIAGSYTLS AKKDCSAHIG KSLYYVFSEG PPTFEPGPNN KSRQIDFIDT GSVFIDAVGE 480
  481 KGDLYFGIHD NGDGYENNVG YFEIHTKATK IPPRIFGHIV SWTEGKVRSA LYGSSDTDSV 540
  541 AHKLYRHISQ SGPFMRMVNA LLVLYVIVSA LYFCFGFSKA SIFQLFITIV KIITVMYVLR 600
  601 PDSWTFFNDH LLSIFIDGPK FLIDAMTGGI GSGGDFGFMD GILYRFSVTQ TWIQLLALIF 660
  661 AGPIGWLSVI LIFWGIIVLI QFLFQAVVIY LVSIMTIALL LCIAPYFLIC VLFKRTKSIF 720
  721 DMWIKVLLQT AMQPVLIFSC IALLVHAINE VIYAMLNFEV CDTCVFNIDL KLTTLCLLSF 780
  781 PLPIGIIPMI PITDTIREIH NTGEAMLIGL PGPIFNILIF LALVHVGRDF VLNSGEMSSI 840
  841 MFGAFTNLSE VGTTAAQSLL SVVGLDRQTG QMLEQHQHQS ELFSRGPGAG RQEGAFSGMM 900
  901 RGFGGAHQDS RGVRRRPVIR PEDPPASF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle