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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88607561, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVIRFTRSN FLRLLVISCL FMTSCGNEVP FPRCVSADNF NSSTTIAVSA YYGSSNVDAF  60
   61 KAENGELGDG SVPGSRKQIV RWQDTGLVTD GEEIVVKVEG AWIPWEKNGE KHSPTMAVNA 120
  121 GISRPTDLSD EFYDSVVDVD RICGPYQKYE KQVGGCRMQC HAIPMQDQDG TGQYGRPCWL 180
  181 EKGYGAYLLF KRPNDQDPNA TMDLIEFPES PTTHLAYESA HDGGEAIYRS SGRIYDVKCQ 240
  241 VVNPERGWKV YVKILDNYYH DNAGGYSLEF TKGVVRGTNT DIFESVRKLV RDELDSAGKK 300
  301 IFQNIAKDKE YRNFVFALIT LSIVLTALTY IFGMVRAPLT DLIAKLLKIV LVLLLISPGS 360
  361 WDFFYNHLLR LFLEGVDEII AVVNEYALGQ KVFNKNNPFS FMDIMIRDKI FSTVVWEAKA 420
  421 RALITADWSS IFALLIIIIA VLFYVGLCLY GFVIYLTAFV GVTFLISLMP ILFVGILFSR 480
  481 FKSLFDGWLT QCISFSMQAI LMFTLIAMFG TLIMHYYYRI FGFTACYNEW IHINIPLIIN 540
  541 RGYYEWTPGQ KYDTITIGKG GTEKRAYPEA GASARYTFTG GGAVIRVPPD YKDEDFRYVD 600
  601 YPFLDPDTKS KTVPGGVVPR DDTAQGRKFQ NLAALVNMLV ASERGSSIAR IVNKIEKELK 660
  661 QLRSSASVTD GHLSKFEDLV SKKRTENPQA NWSDPVFKKQ LLDILISEII ANNAFAGTPL 720
  721 KELEEQYDYS IIKNIKQGWI VMWSEVFGLI LIAFLVWQMR AFVQSIAVAL SGGGMMSRTV 780
  781 ASMYNEGFAR IFSGIPVFGR VIETVDRSID VARLFARAKI AGIGSAIAEA PEKLIARVPI 840
  841 VGGTIGGMVK GMRHVSGALM SSHTEADLYS MKSISPRFDY ARAWLGAHLG YSPLDALQYV 900
  901 GKFSLAKMMG NTSGGLLDNI RQDHAKVMQN LRTLTIGVDK YKPGVYVPKR DEEADKNPFR 960
  961 RPDAAEKRKD EEDRAKLFDD NGNLHIHRGN FWDAVDAMHG LEVMRGQTND DAARERIQRD1020
 1021 IDRIRDEIVR LSRANSSEIP ELQDFVMSGG GVDFDRLRDA ALKRRNVDER DEISGAEAAR1080
 1081 QGVVSQAEER SVADLISGTG ESEPSAGGSQ ALTEERIQGG EGTGDRALPE GIEVGGHELA1140
 1141 DSASALPENQ EGGVDSTAEV VSQAEERSVA DLISGTGESE PSAGGSQALT EERIQGGEGT1200
 1201 GDRALPEGIE VGGHELADSA SVSPENQEGG VDSTAEVVSQ AEESSVADLI SGTGESEPSA1260
 1261 GGSQALTEER IQGGEGTGDR ALPEGIEVGG HELADSASVS PENQEGGVDS TAEVVSQAEE1320
 1321 SSVADLMSGA SDSSSDVSSD TSSDNGDDVN HALKEESSVT NVGDMEIAEG SGSAFSDPEV1380
 1381 RQGGDRSVEV PHAANAAGVR VEDHYHIEDL LSDVGVSDGS LEINFVREES SELGVHEGEG1440
 1441 SNYPQKGLSK EKHKGRGTKA SSSKRDDKDG AHSGSKTDDD SSGLKASGGS KEGARFRNKS1500
 1501 GKAPPSGDRV DSEAISVGED ALEAIASVPE AEALKTVEIP VDKEGDKRDP DEVKAGKKKE1560
 1561 EREEIGLIVP NIDQKAELEG DKSEEAPAIS GIKQDAVVDS RIIEASRVEG KDYTVEGKPL1620
 1621 AEAASADVVT EENVVSAGDE GLDGTLGAEV TAGGDVLEAT ASAPEAEALK TVEIPVDKEG1680
 1681 DKRDPDEVKA GKKKEEREEI GLIVPNIDQK AELEGDKSEE APAISGIKQD AVVDSRIIEA1740
 1741 SRVEGKDYTV EGKPLAEAAS ADVVTEENVV SAGDEGLDGT LGAEVTAGGD ALEAAASAPE1800
 1801 DAALETLDVP VYQEKDGNTA TELPREVVPE ATEYGTKPDD QEKDGNTATE LPREVVPEAT1860
 1861 EYGTKPDDQE KDGNTATELP REVVPEATEY GTKPDDQDGD KGDLRPERLD PDIGDGSAIE1920
 1921 DEVEVRSSRS SESTDSVPSE VTERDAQRDD QEKDGNTATE LPREVVPEAT EYGTKPDDQD1980
 1981 GDKGDLRPER LDPDIGDGSA IEDEVEVRSS RSSESTDSVP SEVTERDAQR DDQEKDGNTA2040
 2041 TELPREVVPE ATEYGTKPDD QDGDKGDLRP ERLDPDIGDG SAIEDEVEVR SSRSSESTDS2100
 2101 VPSEVTERDA QRDDQDGDKG DLRPERLDPD IGDGSAIEDE VEVRSSKKTL LMRRGQIDVS2160
 2161 VVSTATKDIA SEALKSGKEE DVVRDTSSKV AAPIEDRGLL KTESDVTTAA QKQSDTDTLE2220
 2221 LFSGTSSDKK KAKKGDAGKS KKRKPKRKEG QPSGVSTHEI LKGLLSTMTS ENISHQDKSL2280
 2281 PEKDQEQDAS KETHQDEKKK SQEKEREEKA QKQKSSISKM QRKISKLKSR IAQGNLTEDE2340
 2341 IQVLKNKIAE IEADINGLDS 

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