YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598583, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAERKRVVVT GMGLVTPLGV AIPSVWDRLV KGESGIRQVV SRYDVSDLDC KIGGQVLLKG  60
   61 ESDDYVFDPG TWLEEKEVKK IDLFILFGIA ASSIALEDSG ALESNFDPER FGVLLGSGIG 120
  121 GLPNIERNVT ALNARGPRRI SPFFVPGSLI NLLPSHVSMR YGLKGYCNAV VGACATGAIA 180
  181 ITEAARVIES GVCDIVVAGG SESALCRSGI AGFSIIKALS TKFNDTPQVA SRPWDKDRDG 240
  241 FVMGEGAGVV VLEDYEYAKK RGARIYAELT GYGLTADAYH ITAPHPQGEG GMRAMEMALR 300
  301 TANISPSEID YINAHGTSTP TGDSVEIVAI KNLFQDHAYK VAISSTKSSI GHLLGAAGSV 360
  361 EAIFSMLALQ HGVLPPTLNL HNSTEDSNVN LVPLVAEERK ISHVLSNSFG FGGVNASLIF 420
  421 SKV

Type	Start	End	Confidence
Signal Peptide	1	21	0.52
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	423	0.89